Variant report

Variant	rs10455120
Chromosome Location	chr6:79779767-79779768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr6:79779767-79780402	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:79779097-79782230	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000217512	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10943608	0.84[CEU][hapmap]
rs12197385	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2105143	0.84[CEU][hapmap]
rs3902856	0.84[CEU][hapmap]
rs4706743	0.84[CEU][hapmap]
rs9350792	0.84[CEU][hapmap]
rs9352691	0.84[CEU][hapmap]
rs9359360	0.84[CEU][hapmap]
rs9359364	0.80[CEU][hapmap]
rs9361477	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
4	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:79739000-79780000	Weak transcription	NHLF	lung
6	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
7	chr6:79755000-79785400	Weak transcription	Colonic Mucosa	Colon
8	chr6:79759600-79780200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:79760600-79785400	Weak transcription	Right Ventricle	heart
10	chr6:79760600-79786800	Weak transcription	Spleen	Spleen
11	chr6:79764000-79782200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:79766400-79782000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:79766600-79780600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:79768600-79780600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:79768600-79786400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:79769800-79785400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:79770400-79780000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:79770400-79780200	Weak transcription	Brain Germinal Matrix	brain
19	chr6:79770400-79780200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:79770400-79780200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:79770400-79780400	Weak transcription	Fetal Brain Female	brain
22	chr6:79770400-79780600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:79770400-79784400	Weak transcription	Fetal Brain Male	brain
24	chr6:79770400-79784600	Weak transcription	NHEK	skin
25	chr6:79770400-79784800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:79770400-79784800	Weak transcription	HMEC	breast
27	chr6:79770400-79785000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:79770400-79785400	Weak transcription	Thymus	Thymus
29	chr6:79770400-79786600	Weak transcription	Lung	lung
30	chr6:79770600-79779800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:79770600-79780000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:79770600-79780000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:79770600-79780000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:79770600-79780000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:79770600-79780000	Weak transcription	HSMM	muscle
36	chr6:79770600-79780000	Weak transcription	NHDF-Ad	bronchial
37	chr6:79770600-79782000	Weak transcription	Fetal Intestine Large	intestine
38	chr6:79770600-79782000	Weak transcription	Placenta	Placenta
39	chr6:79770600-79782600	Weak transcription	A549	lung
40	chr6:79770600-79783800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:79770600-79785000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:79770600-79785000	Weak transcription	Hela-S3	cervix
43	chr6:79770600-79785400	Weak transcription	Liver	Liver
44	chr6:79770600-79785800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr6:79770600-79786000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:79771000-79782800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:79772000-79779800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:79772000-79784800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:79772200-79780200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:79773000-79779800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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