Variant report

Variant	rs9350792
Chromosome Location	chr6:79587173-79587174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1027813	0.87[ASN][1000 genomes]
rs1044309	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10455120	0.84[CEU][hapmap]
rs10455356	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10755377	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10943596	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10943600	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10943605	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs10943608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10943613	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11752126	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11754419	0.84[ASN][1000 genomes]
rs12153837	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12193319	0.98[ASN][1000 genomes]
rs12196457	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12196485	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12660760	0.81[EUR][1000 genomes]
rs12660770	0.86[ASN][1000 genomes]
rs13191068	0.84[ASN][1000 genomes]
rs13204088	0.80[ASN][1000 genomes]
rs1354831	0.91[ASN][1000 genomes]
rs1354832	0.93[ASN][1000 genomes]
rs1538233	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1538235	1.00[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs1567167	0.91[ASN][1000 genomes]
rs1572584	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1572585	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1890229	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1960542	0.91[ASN][1000 genomes]
rs1984195	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2050659	0.82[ASN][1000 genomes]
rs2050660	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2050661	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2050662	0.81[ASN][1000 genomes]
rs2050663	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2063123	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2095724	0.84[ASN][1000 genomes]
rs2105143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2152951	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2174739	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2174742	0.91[ASN][1000 genomes]
rs2174743	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2321895	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2874643	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35887627	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36128361	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3805747	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs3902856	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147183	0.91[ASN][1000 genomes]
rs4415132	0.90[ASN][1000 genomes]
rs4421161	0.91[ASN][1000 genomes]
rs4565265	0.84[ASN][1000 genomes]
rs4706079	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4706080	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs4706742	0.93[ASN][1000 genomes]
rs4706743	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706746	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4706747	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs55755815	0.93[ASN][1000 genomes]
rs56057971	0.91[ASN][1000 genomes]
rs6454092	0.81[ASN][1000 genomes]
rs6912683	0.84[ASN][1000 genomes]
rs6915558	0.81[ASN][1000 genomes]
rs6926537	0.91[ASN][1000 genomes]
rs6937465	0.91[ASN][1000 genomes]
rs6940637	0.83[ASN][1000 genomes]
rs7742034	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7756858	0.87[ASN][1000 genomes]
rs7760866	0.85[ASN][1000 genomes]
rs9341754	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9343843	0.98[ASN][1000 genomes]
rs9343844	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9343848	0.91[ASN][1000 genomes]
rs9343856	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9343860	0.84[ASN][1000 genomes]
rs9343861	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9343863	0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9350794	0.87[ASN][1000 genomes]
rs9350799	0.84[ASN][1000 genomes]
rs9350800	0.84[ASN][1000 genomes]
rs9352663	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352664	0.91[ASN][1000 genomes]
rs9352665	0.91[ASN][1000 genomes]
rs9352666	0.91[ASN][1000 genomes]
rs9352667	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9352669	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9352670	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9352675	0.93[ASN][1000 genomes]
rs9352676	0.86[ASN][1000 genomes]
rs9352683	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9352686	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9352691	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9359354	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9359359	0.84[ASN][1000 genomes]
rs9359360	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9359362	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9361451	0.91[ASN][1000 genomes]
rs9361454	0.91[ASN][1000 genomes]
rs9361455	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9361460	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9361466	0.87[ASN][1000 genomes]
rs9361467	0.91[ASN][1000 genomes]
rs9361477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9361480	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9361482	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9443621	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9443622	0.96[ASN][1000 genomes]
rs9443626	0.87[ASN][1000 genomes]
rs9443637	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9443638	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9448580	0.87[ASN][1000 genomes]
rs9448584	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9448587	0.89[ASN][1000 genomes]
rs9448588	0.98[ASN][1000 genomes]
rs9448590	0.93[ASN][1000 genomes]
rs9448591	0.93[ASN][1000 genomes]
rs9448596	0.87[ASN][1000 genomes]
rs9448607	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9448610	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs971994	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9350792	IRAK1BP1	cis	Skin Sun Exposed Lower leg	GTEx
rs9350792	IRAK1BP1	cis	cerebellum	SCAN
rs9350792	IRAK1BP1	cis	Artery Tibial	GTEx

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79577800-79587200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79577800-79587400	Weak transcription	Esophagus	oesophagus
3	chr6:79577800-79597200	Weak transcription	Gastric	stomach
4	chr6:79578200-79587200	Weak transcription	Thymus	Thymus
5	chr6:79578200-79587400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:79578200-79587400	Weak transcription	Pancreas	Pancrea
7	chr6:79578200-79589400	Weak transcription	Psoas Muscle	Psoas
8	chr6:79578200-79590800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:79578200-79592400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:79578200-79592800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:79578200-79597800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:79578200-79608600	Weak transcription	Adipose Nuclei	Adipose
13	chr6:79578200-79608600	Weak transcription	Left Ventricle	heart
14	chr6:79578200-79613600	Weak transcription	HSMM	muscle
15	chr6:79578400-79589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:79578400-79589400	Weak transcription	Fetal Brain Male	brain
17	chr6:79578400-79593400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:79578400-79613800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
21	chr6:79578600-79587400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:79578600-79593200	Weak transcription	NHEK	skin
23	chr6:79578600-79596000	Weak transcription	Fetal Heart	heart
24	chr6:79578600-79596600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:79578600-79598200	Weak transcription	HUVEC	blood vessel
26	chr6:79578600-79604800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:79578600-79612400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:79578600-79618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:79578800-79587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:79578800-79602800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:79578800-79608600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:79578800-79613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:79581800-79587200	Weak transcription	Fetal Stomach	stomach
34	chr6:79581800-79593600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:79582000-79587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:79582000-79596600	Weak transcription	Ovary	ovary
37	chr6:79582000-79608400	Weak transcription	Fetal Intestine Large	intestine
38	chr6:79584800-79588200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:79584800-79608600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:79585200-79588200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:79585200-79619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:79585200-79620200	Weak transcription	Fetal Lung	lung
43	chr6:79585400-79588200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:79585600-79588200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:79585800-79588200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr6:79585800-79588400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
47	chr6:79585800-79588600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:79585800-79588600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr6:79586000-79587600	ZNF genes & repeats	Dnd41	blood
50	chr6:79586200-79587600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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