Variant report

Variant	rs9352663
Chromosome Location	chr6:79558164-79558165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1027813	0.93[ASN][1000 genomes]
rs1044309	0.82[ASN][1000 genomes]
rs10755377	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10943596	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10943600	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10943608	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11752126	0.85[EUR][1000 genomes]
rs12153837	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12193319	0.93[ASN][1000 genomes]
rs12196457	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12196485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660770	0.82[ASN][1000 genomes]
rs1354831	0.85[ASN][1000 genomes]
rs1354832	0.85[ASN][1000 genomes]
rs1567167	0.98[ASN][1000 genomes]
rs1960542	0.99[ASN][1000 genomes]
rs2063123	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2105143	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2174742	0.85[ASN][1000 genomes]
rs2174743	0.86[ASN][1000 genomes]
rs2321895	0.84[EUR][1000 genomes]
rs2874643	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35887627	0.80[EUR][1000 genomes]
rs36128361	0.86[EUR][1000 genomes]
rs3902856	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4147183	0.99[ASN][1000 genomes]
rs4415132	0.98[ASN][1000 genomes]
rs4421161	0.99[ASN][1000 genomes]
rs4706079	0.85[ASN][1000 genomes]
rs4706742	0.85[ASN][1000 genomes]
rs4706743	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4706746	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55755815	0.85[ASN][1000 genomes]
rs56057971	0.85[ASN][1000 genomes]
rs6912683	0.91[ASN][1000 genomes]
rs6926537	0.99[ASN][1000 genomes]
rs6937465	0.98[ASN][1000 genomes]
rs7756858	0.81[ASN][1000 genomes]
rs9341754	0.93[ASN][1000 genomes]
rs9343843	0.93[ASN][1000 genomes]
rs9343844	0.91[ASN][1000 genomes]
rs9343848	0.83[ASN][1000 genomes]
rs9343861	0.92[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9350792	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9350794	0.81[ASN][1000 genomes]
rs9352662	0.85[ASN][1000 genomes]
rs9352664	0.98[ASN][1000 genomes]
rs9352665	0.98[ASN][1000 genomes]
rs9352666	0.99[ASN][1000 genomes]
rs9352667	0.99[ASN][1000 genomes]
rs9352669	0.93[ASN][1000 genomes]
rs9352670	0.93[ASN][1000 genomes]
rs9352675	0.85[ASN][1000 genomes]
rs9359354	0.91[ASN][1000 genomes]
rs9359360	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9361451	0.99[ASN][1000 genomes]
rs9361454	0.99[ASN][1000 genomes]
rs9361455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361460	0.91[ASN][1000 genomes]
rs9361466	0.81[ASN][1000 genomes]
rs9361467	0.83[ASN][1000 genomes]
rs9361477	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9443621	0.94[ASN][1000 genomes]
rs9443622	0.93[ASN][1000 genomes]
rs9443626	0.81[ASN][1000 genomes]
rs9448580	0.93[ASN][1000 genomes]
rs9448584	0.99[ASN][1000 genomes]
rs9448587	0.82[ASN][1000 genomes]
rs9448588	0.91[ASN][1000 genomes]
rs9448590	0.85[ASN][1000 genomes]
rs9448591	0.85[ASN][1000 genomes]
rs9448596	0.81[ASN][1000 genomes]
rs971994	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9352663	IRAK1BP1	cis	Skin Sun Exposed Lower leg	GTEx
rs9352663	IRAK1BP1	cis	Artery Tibial	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79553400-79558200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:79553600-79564200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:79553800-79562400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:79554200-79564200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:79555000-79562400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:79555600-79558200	Weak transcription	Pancreas	Pancrea
7	chr6:79555800-79576400	Weak transcription	Left Ventricle	heart
8	chr6:79556200-79562400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:79557000-79560400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:79557800-79571200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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