Variant report

Variant	rs9352662
Chromosome Location	chr6:79541491-79541492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1027813	0.88[ASN][1000 genomes]
rs1044309	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap]
rs10455356	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10943605	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs10943608	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs12153837	0.80[ASN][1000 genomes]
rs12193319	0.81[ASN][1000 genomes]
rs12196485	0.85[ASN][1000 genomes]
rs1538235	0.95[CHB][hapmap]
rs1567167	0.87[ASN][1000 genomes]
rs1572584	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap]
rs1572585	0.90[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap]
rs1890229	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs1960542	0.85[ASN][1000 genomes]
rs1984195	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap]
rs2050660	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap]
rs2050661	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs2174739	0.95[CHB][hapmap]
rs2174743	0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap]
rs2874643	0.85[ASN][1000 genomes]
rs3805747	0.95[CHB][hapmap]
rs3902856	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs4147183	0.85[ASN][1000 genomes]
rs4415132	0.84[ASN][1000 genomes]
rs4421161	0.85[ASN][1000 genomes]
rs4706079	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs4706743	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs4706747	0.95[CHB][hapmap]
rs6912683	0.84[ASN][1000 genomes]
rs6926537	0.85[ASN][1000 genomes]
rs6937465	0.87[ASN][1000 genomes]
rs7742034	0.95[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap]
rs9341754	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.81[ASN][1000 genomes]
rs9343843	0.81[ASN][1000 genomes]
rs9343844	0.95[CHB][hapmap]
rs9343856	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs9350792	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs9352663	0.85[ASN][1000 genomes]
rs9352664	0.87[ASN][1000 genomes]
rs9352665	0.87[ASN][1000 genomes]
rs9352666	0.85[ASN][1000 genomes]
rs9352667	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes]
rs9352669	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs9352670	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.81[ASN][1000 genomes]
rs9352683	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap]
rs9359354	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs9359360	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs9361451	0.85[ASN][1000 genomes]
rs9361454	0.85[ASN][1000 genomes]
rs9361455	0.85[ASN][1000 genomes]
rs9361460	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs9361477	0.95[CHB][hapmap]
rs9361480	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs9443621	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.84[ASN][1000 genomes]
rs9443622	0.82[ASN][1000 genomes]
rs9443637	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs9443638	0.95[CHB][hapmap]
rs9448580	0.88[ASN][1000 genomes]
rs9448584	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes]
rs9448588	0.81[ASN][1000 genomes]
rs9448607	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap]
rs9448610	0.95[CHB][hapmap]
rs971994	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79539600-79542000	Enhancers	Duodenum Mucosa	Duodenum
2	chr6:79540400-79542000	Enhancers	Fetal Intestine Large	intestine
3	chr6:79540600-79541600	Enhancers	Ovary	ovary
4	chr6:79540800-79541600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr6:79541000-79541600	Enhancers	Pancreas	Pancrea
6	chr6:79541000-79542800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:79541200-79542000	Enhancers	Brain Angular Gyrus	brain
8	chr6:79541200-79542000	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:79541200-79542000	Enhancers	Brain Hippocampus Middle	brain
10	chr6:79541200-79542000	Enhancers	Right Atrium	heart
11	chr6:79541200-79542400	Enhancers	Fetal Intestine Small	intestine
12	chr6:79541400-79541600	Enhancers	Aorta	Aorta
13	chr6:79541400-79542000	Enhancers	Brain Substantia Nigra	brain
14	chr6:79541400-79542000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr6:79541400-79542200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:79541400-79542400	Enhancers	Left Ventricle	heart
17	chr6:79541400-79542400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:79541400-79542800	Enhancers	HSMMtube	muscle
19	chr6:79541400-79543000	Enhancers	Fetal Heart	heart

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