Variant report

Variant	rs9359360
Chromosome Location	chr6:79702796-79702797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79696346..79699328-chr6:79702014..79705060,3	K562	blood:

Extended variants
information (count: 126 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1044309	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10455120	0.84[CEU][hapmap]
rs10455356	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10755377	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10943596	0.81[EUR][1000 genomes]
rs10943600	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10943605	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10943608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10943609	0.94[ASN][1000 genomes]
rs10943613	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10943616	0.90[CHB][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs11752126	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754419	0.98[ASN][1000 genomes]
rs12153837	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12193319	0.82[ASN][1000 genomes]
rs12196457	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12196485	0.84[EUR][1000 genomes]
rs12660760	0.83[EUR][1000 genomes]
rs12660770	0.94[ASN][1000 genomes]
rs13191068	0.98[ASN][1000 genomes]
rs13202531	0.86[ASN][1000 genomes]
rs13204088	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1354831	0.89[ASN][1000 genomes]
rs1354832	0.89[ASN][1000 genomes]
rs1413968	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1413969	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415859	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538233	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1538235	1.00[CHB][hapmap];0.84[JPT][hapmap];0.96[ASN][1000 genomes]
rs1547731	0.92[ASN][1000 genomes]
rs1572584	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs1572585	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs1890229	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1984195	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2050659	0.97[ASN][1000 genomes]
rs2050660	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs2050661	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2050662	0.95[ASN][1000 genomes]
rs2050663	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2063123	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2095724	0.98[ASN][1000 genomes]
rs2105143	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2152951	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2174739	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2174742	0.89[ASN][1000 genomes]
rs2174743	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs2874643	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35887627	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36128361	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805747	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3902856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4565265	0.98[ASN][1000 genomes]
rs4706079	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4706080	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4706742	0.89[ASN][1000 genomes]
rs4706743	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4706746	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706747	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs55755815	0.89[ASN][1000 genomes]
rs56057971	0.89[ASN][1000 genomes]
rs6454092	0.95[ASN][1000 genomes]
rs6915558	0.95[ASN][1000 genomes]
rs6940637	0.99[ASN][1000 genomes]
rs7741943	0.94[ASN][1000 genomes]
rs7742034	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs7742431	0.92[ASN][1000 genomes]
rs7753531	0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs7756858	0.94[ASN][1000 genomes]
rs7760866	0.92[ASN][1000 genomes]
rs9341754	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9343843	0.82[ASN][1000 genomes]
rs9343844	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9343848	0.91[ASN][1000 genomes]
rs9343856	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9343860	0.98[ASN][1000 genomes]
rs9343861	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343863	0.86[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9343870	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9350792	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9350794	0.94[ASN][1000 genomes]
rs9350799	0.97[ASN][1000 genomes]
rs9350800	0.98[ASN][1000 genomes]
rs9352663	0.84[EUR][1000 genomes]
rs9352667	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9352669	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9352670	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9352675	0.89[ASN][1000 genomes]
rs9352676	0.91[ASN][1000 genomes]
rs9352683	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9352686	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs9352691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9352694	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9359354	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9359359	0.97[ASN][1000 genomes]
rs9359362	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9359364	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9361455	0.84[EUR][1000 genomes]
rs9361460	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9361466	0.94[ASN][1000 genomes]
rs9361467	0.91[ASN][1000 genomes]
rs9361472	0.82[ASN][1000 genomes]
rs9361477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361480	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs9361482	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs9361488	0.91[ASN][1000 genomes]
rs9443621	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9443622	0.82[ASN][1000 genomes]
rs9443626	0.94[ASN][1000 genomes]
rs9443632	0.94[ASN][1000 genomes]
rs9443637	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9443638	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9443643	0.86[ASN][1000 genomes]
rs9443645	0.90[CHB][hapmap];0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs9448584	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9448588	0.83[ASN][1000 genomes]
rs9448590	0.89[ASN][1000 genomes]
rs9448591	0.89[ASN][1000 genomes]
rs9448596	0.94[ASN][1000 genomes]
rs9448597	0.80[ASN][1000 genomes]
rs9448607	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9448610	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs946022	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9359360	IRAK1BP1	cis	Artery Tibial	GTEx
rs9359360	IRAK1BP1	cis	Skin Sun Exposed Lower leg	GTEx
rs9359360	IRAK1BP1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648800-79714400	Weak transcription	Gastric	stomach
2	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
3	chr6:79659200-79702800	Weak transcription	Psoas Muscle	Psoas
4	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
5	chr6:79659600-79704000	Weak transcription	Lung	lung
6	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
7	chr6:79659800-79703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:79669800-79707000	Weak transcription	Aorta	Aorta
11	chr6:79675200-79704600	Weak transcription	Small Intestine	intestine
12	chr6:79675800-79706800	Weak transcription	NHEK	skin
13	chr6:79676000-79703600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:79687000-79709400	Strong transcription	Duodenum Mucosa	Duodenum
15	chr6:79687000-79714400	Strong transcription	Liver	Liver
16	chr6:79687000-79715800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:79687000-79715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:79687200-79702800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:79687200-79702800	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:79687200-79703000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:79687200-79703400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:79687200-79703400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:79687200-79709400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:79687200-79709400	Strong transcription	Fetal Intestine Large	intestine
27	chr6:79687200-79714400	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:79687200-79714600	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr6:79687200-79714600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr6:79687200-79714800	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr6:79687200-79715000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:79687200-79715400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:79687200-79715600	Strong transcription	Primary B cells from cord blood	blood
34	chr6:79687200-79715600	Strong transcription	Fetal Thymus	thymus
35	chr6:79687200-79716000	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:79687200-79717600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:79687600-79718600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:79687600-79775000	Strong transcription	Dnd41	blood
41	chr6:79687800-79702800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:79688000-79703000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:79688000-79709400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:79688400-79708800	Strong transcription	GM12878-XiMat	blood
46	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:79688800-79709000	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:79693800-79705600	Strong transcription	HSMM	muscle

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