Variant report

Variant	rs9352694
Chromosome Location	chr6:79800818-79800819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79793888..79796607-chr6:79798630..79801708,3	K562	blood:
2	chr6:79793555..79797386-chr6:79799912..79802613,3	K562	blood:
3	chr6:79785426..79789037-chr6:79798518..79801923,3	MCF-7	breast:
4	chr6:79800437..79802708-chr6:79814576..79817076,2	K562	blood:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1044309	0.82[ASN][1000 genomes]
rs10755377	0.80[ASN][1000 genomes]
rs10943609	0.81[ASN][1000 genomes]
rs10943613	0.84[ASN][1000 genomes]
rs10943616	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11752126	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11754419	0.85[ASN][1000 genomes]
rs12196457	0.80[ASN][1000 genomes]
rs12660770	0.82[ASN][1000 genomes]
rs13191068	0.85[ASN][1000 genomes]
rs13204088	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1413968	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1413969	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415859	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1538233	0.84[ASN][1000 genomes]
rs1538235	0.82[ASN][1000 genomes]
rs1547731	0.91[ASN][1000 genomes]
rs1572584	0.83[ASN][1000 genomes]
rs1572585	0.85[ASN][1000 genomes]
rs1890229	0.83[ASN][1000 genomes]
rs1984195	0.81[ASN][1000 genomes]
rs2050659	0.84[ASN][1000 genomes]
rs2050660	0.81[ASN][1000 genomes]
rs2050661	0.81[ASN][1000 genomes]
rs2050662	0.88[ASN][1000 genomes]
rs2063123	0.82[ASN][1000 genomes]
rs2095724	0.85[ASN][1000 genomes]
rs2105143	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2152951	0.89[ASN][1000 genomes]
rs35887627	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36128361	0.85[ASN][1000 genomes]
rs3805747	0.80[ASN][1000 genomes]
rs3902856	0.86[ASN][1000 genomes]
rs4565265	0.85[ASN][1000 genomes]
rs4706080	0.89[ASN][1000 genomes]
rs4706746	0.80[ASN][1000 genomes]
rs4706747	0.85[ASN][1000 genomes]
rs6454092	0.82[ASN][1000 genomes]
rs6915558	0.88[ASN][1000 genomes]
rs6940637	0.85[ASN][1000 genomes]
rs7741943	0.81[ASN][1000 genomes]
rs7742034	0.85[ASN][1000 genomes]
rs7753531	0.95[ASN][1000 genomes]
rs7756858	0.81[ASN][1000 genomes]
rs9343856	0.80[ASN][1000 genomes]
rs9343860	0.85[ASN][1000 genomes]
rs9343861	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9343863	0.87[ASN][1000 genomes]
rs9343870	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350794	0.81[ASN][1000 genomes]
rs9350799	0.84[ASN][1000 genomes]
rs9350800	0.85[ASN][1000 genomes]
rs9352683	0.85[ASN][1000 genomes]
rs9352686	0.88[ASN][1000 genomes]
rs9352691	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9359359	0.84[ASN][1000 genomes]
rs9359360	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9359362	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9359364	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9361466	0.81[ASN][1000 genomes]
rs9361477	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9361480	0.85[ASN][1000 genomes]
rs9361482	0.85[ASN][1000 genomes]
rs9361488	0.90[ASN][1000 genomes]
rs9443626	0.81[ASN][1000 genomes]
rs9443632	0.81[ASN][1000 genomes]
rs9443637	0.84[ASN][1000 genomes]
rs9443638	0.84[ASN][1000 genomes]
rs9443643	0.98[ASN][1000 genomes]
rs9443645	0.92[ASN][1000 genomes]
rs9448596	0.81[ASN][1000 genomes]
rs9448607	0.84[ASN][1000 genomes]
rs9448610	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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