Variant report

Variant	rs9443645
Chromosome Location	chr6:79822924-79822925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79787781..79789616-chr6:79822786..79824625,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1044309	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap]
rs10455356	0.82[CHB][hapmap]
rs10943605	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs10943608	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs10943613	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs10943616	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11752126	0.81[ASN][1000 genomes]
rs11754419	0.83[ASN][1000 genomes]
rs13191068	0.83[ASN][1000 genomes]
rs13204088	0.86[ASN][1000 genomes]
rs1413968	0.92[ASN][1000 genomes]
rs1413969	0.92[ASN][1000 genomes]
rs1415859	0.94[ASN][1000 genomes]
rs1538233	0.81[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1538235	0.84[CEU][hapmap];0.90[CHB][hapmap]
rs1547731	0.81[CEU][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1572584	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];0.80[ASN][1000 genomes]
rs1572585	0.84[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];0.80[YRI][hapmap];0.82[ASN][1000 genomes]
rs1890229	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.80[ASN][1000 genomes]
rs1984195	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs2050659	0.81[ASN][1000 genomes]
rs2050660	0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap]
rs2050661	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap]
rs2050662	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2050663	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap]
rs2095724	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105143	0.90[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs2152951	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2174739	0.81[CEU][hapmap];0.90[CHB][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap]
rs36128361	0.81[ASN][1000 genomes]
rs3805747	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs3902856	0.90[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs4565265	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4706080	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];0.86[ASN][1000 genomes]
rs4706747	0.81[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs6915558	0.85[ASN][1000 genomes]
rs6940637	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7742034	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs7753531	0.95[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs9343856	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.86[MKK][hapmap];0.84[YRI][hapmap]
rs9343860	0.83[ASN][1000 genomes]
rs9343861	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs9343863	0.87[CHD][hapmap];0.97[GIH][hapmap];0.86[LWK][hapmap];0.86[MKK][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343870	0.94[ASN][1000 genomes]
rs9350799	0.81[ASN][1000 genomes]
rs9350800	0.83[ASN][1000 genomes]
rs9352683	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];0.83[ASN][1000 genomes]
rs9352686	0.81[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9352691	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs9352694	0.92[ASN][1000 genomes]
rs9359359	0.81[ASN][1000 genomes]
rs9359360	0.90[CHB][hapmap];0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs9359364	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs9361477	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs9361480	0.81[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.83[ASN][1000 genomes]
rs9361482	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs9361488	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9443637	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs9443638	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs9443643	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9448607	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]
rs9448610	0.90[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9443645	IRAK1BP1	cis	Artery Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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