Variant report

Variant	rs7756858
Chromosome Location	chr6:79619968-79619969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs1027813	0.91[EUR][1000 genomes]
rs1044309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10455356	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10755377	0.96[ASN][1000 genomes]
rs10943600	0.93[ASN][1000 genomes]
rs10943605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10943608	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10943609	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10943613	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11752126	0.94[ASN][1000 genomes]
rs11754419	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12153837	0.85[ASN][1000 genomes]
rs12193319	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12196457	0.96[ASN][1000 genomes]
rs12196485	0.81[ASN][1000 genomes]
rs12660770	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13191068	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13202531	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13204088	0.90[ASN][1000 genomes]
rs1354831	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1354832	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1413968	0.81[ASN][1000 genomes]
rs1413969	0.81[ASN][1000 genomes]
rs1415859	0.83[ASN][1000 genomes]
rs1538233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1538235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1547731	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1567167	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1572584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1572585	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1890229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1960542	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1984195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2050659	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050660	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2050662	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2063123	0.90[ASN][1000 genomes]
rs2095724	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2105143	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2152951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2174739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2174742	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2174743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2874643	0.81[ASN][1000 genomes]
rs35887627	0.91[ASN][1000 genomes]
rs36128361	0.94[ASN][1000 genomes]
rs3805747	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3902856	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4147183	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4415132	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4421161	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4565265	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4706079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4706742	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706743	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4706746	0.88[ASN][1000 genomes]
rs4706747	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55755815	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56057971	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6454092	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6912683	0.88[EUR][1000 genomes]
rs6915558	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926537	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6937465	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6940637	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7741943	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7742034	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742431	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7753358	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7753531	0.84[ASN][1000 genomes]
rs7760866	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9343843	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9343844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9343848	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9343860	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9343861	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs9343863	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9343870	0.83[ASN][1000 genomes]
rs9350792	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9350794	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350799	0.97[ASN][1000 genomes]
rs9350800	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9352663	0.81[ASN][1000 genomes]
rs9352664	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9352665	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9352666	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9352667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9352669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9352670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352675	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9352676	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9352683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9352686	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9352691	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs9352694	0.81[ASN][1000 genomes]
rs9359354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9359359	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9359360	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9359362	0.91[ASN][1000 genomes]
rs9359364	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs9361451	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9361454	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9361455	0.81[ASN][1000 genomes]
rs9361460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9361462	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9361466	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361467	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9361472	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9361477	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs9361480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9361482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9361488	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9443621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9443622	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9443626	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443632	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9443638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9443643	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9448580	0.91[EUR][1000 genomes]
rs9448584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9448587	0.96[EUR][1000 genomes]
rs9448588	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9448590	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9448591	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9448596	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448597	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9448607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9448610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs946022	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs971994	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7756858	IRAK1BP1	cis	Artery Tibial	GTEx
rs7756858	IRAK1BP1	cis	Artery Aorta	GTEx
rs7756858	IRAK1BP1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
2	chr6:79585200-79620200	Weak transcription	Fetal Lung	lung
3	chr6:79589800-79620200	Weak transcription	Fetal Brain Male	brain
4	chr6:79592600-79620200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:79597000-79620000	Weak transcription	Fetal Kidney	kidney
6	chr6:79606200-79620200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:79606400-79620200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:79606800-79620200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:79608000-79620200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:79609400-79620000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:79609400-79620200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:79610600-79620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:79613000-79620200	Weak transcription	Fetal Stomach	stomach
14	chr6:79614000-79620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:79614200-79620000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:79614200-79620200	Weak transcription	NHLF	lung
17	chr6:79618200-79620000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:79618200-79620000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:79618200-79620000	Enhancers	NHDF-Ad	bronchial
20	chr6:79618400-79620200	Enhancers	Osteobl	bone
21	chr6:79618600-79620000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:79618600-79620000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:79618800-79620000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:79618800-79620000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:79618800-79620200	Enhancers	GM12878-XiMat	blood
26	chr6:79619000-79620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:79619000-79620200	Enhancers	Adipose Nuclei	Adipose
28	chr6:79619200-79620000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:79619200-79620000	Enhancers	Fetal Intestine Large	intestine
30	chr6:79619200-79620200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:79619200-79620200	Enhancers	Fetal Intestine Small	intestine
32	chr6:79619200-79620800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
33	chr6:79619200-79621600	Enhancers	Fetal Heart	heart
34	chr6:79619200-79625800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:79619400-79620200	Weak transcription	HSMM	muscle
36	chr6:79619400-79620200	Weak transcription	HSMMtube	muscle
37	chr6:79619600-79620200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:79619600-79620200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:79619600-79620200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:79619800-79620000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
41	chr6:79619800-79620000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:79619800-79620000	Enhancers	Primary B cells from cord blood	blood
43	chr6:79619800-79620000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:79619800-79620000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:79619800-79620000	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr6:79619800-79620000	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:79619800-79620000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr6:79619800-79620000	Active TSS	Stomach Smooth Muscle	stomach
49	chr6:79619800-79620000	Enhancers	HUVEC	blood vessel
50	chr6:79619800-79620200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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