Variant report

Variant	rs12660760
Chromosome Location	chr6:79643109-79643110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10755377	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943600	0.84[EUR][1000 genomes]
rs10943608	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11752126	0.84[EUR][1000 genomes]
rs12196457	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2063123	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2105143	0.81[EUR][1000 genomes]
rs36128361	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3902856	0.83[EUR][1000 genomes]
rs4706743	0.86[EUR][1000 genomes]
rs4706746	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9343861	0.82[EUR][1000 genomes]
rs9350792	0.81[EUR][1000 genomes]
rs9359360	0.83[EUR][1000 genomes]
rs9361462	0.82[ASN][1000 genomes]
rs9361472	0.85[ASN][1000 genomes]
rs9361477	0.82[EUR][1000 genomes]
rs9448597	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12660760	IRAK1BP1	cis	Artery Tibial	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79626000-79644000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:79639600-79650400	Weak transcription	HSMMtube	muscle
3	chr6:79640400-79655000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:79640600-79648800	Weak transcription	Fetal Kidney	kidney
5	chr6:79641400-79647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:79641600-79650200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:79642400-79649400	Weak transcription	Adipose Nuclei	Adipose
8	chr6:79642400-79650000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:79642400-79653000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:79642600-79646200	Weak transcription	HSMM	muscle
11	chr6:79642600-79649400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:79642600-79649400	Weak transcription	Osteobl	bone
13	chr6:79642600-79658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:79642800-79649000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:79642800-79649400	Weak transcription	Fetal Lung	lung
16	chr6:79642800-79650400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:79643000-79644000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:79643000-79646400	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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