Variant report

Variant	rs12197434
Chromosome Location	chr6:24204548-24204549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12192874	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12199816	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12212062	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12213642	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1856839	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2876667	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28990375	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4535539	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914194	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914641	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6938792	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs793851	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793852	0.90[ASN][1000 genomes]
rs9460974	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9467072	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467073	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467075	0.90[ASN][1000 genomes]
rs9467076	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24196400-24205400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24199400-24204600	Weak transcription	HepG2	liver
3	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
4	chr6:24201600-24206000	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links