Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:24204938-24205765	HepG2	liver:	n/a	n/a
2	GATA3	chr6:24205454-24205954	SH-SY5Y	brain:	n/a	n/a
3	RAD21	chr6:24204714-24206204	SK-N-SH	brain:	n/a	n/a
4	MYBL2	chr6:24205150-24205854	HepG2	liver:	n/a	n/a
5	TEAD4	chr6:24205204-24205778	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DCDC2	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12192874	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196541	0.91[CHD][hapmap]
rs12197434	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12199816	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212062	1.00[ASN][1000 genomes]
rs12213642	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856839	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876667	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28990375	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846828	1.00[CHB][hapmap]
rs6914194	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914641	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938792	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793851	0.96[ASN][1000 genomes]
rs793852	0.96[ASN][1000 genomes]
rs9460974	0.96[ASN][1000 genomes]
rs9467072	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467073	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467075	0.96[ASN][1000 genomes]
rs9467076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4535539	DCDC2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24201600-24206000	Weak transcription	Fetal Kidney	kidney
3	chr6:24204600-24207000	Genic enhancers	HepG2	liver
4	chr6:24205000-24206600	Enhancers	Liver	Liver
5	chr6:24205400-24205800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:24205600-24206000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:24205600-24207000	Weak transcription	Brain Germinal Matrix	brain

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