Variant report

Variant	rs793851
Chromosome Location	chr6:24196144-24196145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10085260	0.83[EUR][1000 genomes]
rs12192874	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12197434	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199816	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212062	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12213642	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1856839	0.96[ASN][1000 genomes]
rs2876667	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28990375	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4535539	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6914194	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6914641	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6938792	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs793852	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460974	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467072	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467073	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467075	0.93[ASN][1000 genomes]
rs9467076	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24153800-24200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24177800-24198400	Weak transcription	A549	lung
3	chr6:24194800-24197000	Enhancers	Fetal Intestine Large	intestine
4	chr6:24194800-24199400	Genic enhancers	HepG2	liver
5	chr6:24195000-24196200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:24195000-24196200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:24195600-24196400	Enhancers	Fetal Intestine Small	intestine
8	chr6:24195800-24197000	Enhancers	Stomach Mucosa	stomach
9	chr6:24196000-24196600	Weak transcription	Pancreas	Pancrea
10	chr6:24196000-24197400	Strong transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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