Variant report

Variant	rs12197637
Chromosome Location	chr6:13812100-13812101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13800602..13802958-chr6:13809686..13812122,2	K562	blood:
2	chr6:13709898..13714007-chr6:13809605..13814723,8	K562	blood:
3	chr6:13710378..13713685-chr6:13811318..13818372,10	MCF-7	breast:
4	chr6:13811882..13817297-chr6:13824102..13828307,6	K562	blood:
5	chr6:13810806..13813254-chr6:13919229..13921637,2	K562	blood:
6	chr6:13804130..13805948-chr6:13811469..13813056,2	MCF-7	breast:
7	chr6:13709898..13716469-chr6:13809605..13815390,11	K562	blood:
8	chr6:13810460..13812659-chr6:13922844..13924770,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000180537	Chromatin interaction
ENSG00000272209	Chromatin interaction

rs_ID	r²[population]
rs12205827	0.97[EUR][1000 genomes]
rs12206286	0.91[EUR][1000 genomes]
rs6901643	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
2	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
4	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:13793000-13813200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:13794800-13812200	Weak transcription	HMEC	breast
8	chr6:13795400-13812200	Weak transcription	HUVEC	blood vessel
9	chr6:13800600-13813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:13801400-13812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:13801400-13813200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:13801600-13813200	Weak transcription	A549	lung
13	chr6:13801800-13812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:13802000-13812200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:13802600-13812400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:13802800-13812200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:13802800-13813000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:13802800-13813200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:13802800-13813600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:13802800-13813800	Weak transcription	Esophagus	oesophagus
21	chr6:13803000-13812200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:13806000-13813800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:13806200-13812200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:13806200-13812800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:13806200-13813200	Weak transcription	HSMMtube	muscle
26	chr6:13806800-13812600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:13807000-13812200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:13807000-13813200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:13807000-13813400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:13807200-13812200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:13807400-13812200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:13807400-13812200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:13807400-13813200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:13807400-13813200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:13807400-13813600	Weak transcription	Thymus	Thymus
36	chr6:13807600-13812200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:13807600-13812200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:13807600-13812400	Weak transcription	Primary T cells from cord blood	blood
39	chr6:13807600-13813000	Weak transcription	Fetal Thymus	thymus
40	chr6:13807600-13813200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:13807600-13813200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:13807600-13813200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:13808600-13813200	Weak transcription	HSMM	muscle
44	chr6:13808600-13813200	Weak transcription	NH-A	brain
45	chr6:13809200-13812400	Weak transcription	Primary B cells from cord blood	blood
46	chr6:13809400-13812200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:13809600-13812200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:13809800-13812800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:13809800-13813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:13810600-13812200	Enhancers	Skeletal Muscle Female	skeletal muscle

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