Variant report

Variant	rs12205827
Chromosome Location	chr6:13795913-13795914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13723807..13725735-chr6:13795426..13797327,2	MCF-7	breast:
2	chr6:13794837..13795959-chr6:14066666..14067719,5	K562	blood:
3	chr6:13795428..13795980-chr6:13908807..13909709,3	MCF-7	breast:
4	chr6:13795502..13799079-chr6:13811264..13816193,8	MCF-7	breast:
5	chr6:13709823..13712902-chr6:13793463..13795920,4	MCF-7	breast:
6	chr6:13795446..13795955-chr6:14066816..14067709,2	MCF-7	breast:
7	chr6:13793263..13796743-chr6:13799155..13802204,3	K562	blood:
8	chr6:13795311..13796160-chr6:13873802..13874794,4	MCF-7	breast:
9	chr6:13781829..13783763-chr6:13794136..13796516,2	K562	blood:
10	chr6:13710869..13713122-chr6:13795555..13797284,3	MCF-7	breast:
11	chr6:13795475..13796182-chr6:14144508..14145109,3	K562	blood:
12	chr6:13613199..13615413-chr6:13795844..13797399,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12197637	0.97[EUR][1000 genomes]
rs12206286	0.91[EUR][1000 genomes]
rs6901643	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6918488	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13780800-13797800	Weak transcription	Thymus	Thymus
3	chr6:13781000-13801200	Weak transcription	Psoas Muscle	Psoas
4	chr6:13781000-13802000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:13785000-13800800	Weak transcription	Brain Angular Gyrus	brain
6	chr6:13785200-13801600	Weak transcription	Gastric	stomach
7	chr6:13785400-13800600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:13786000-13801200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:13787600-13799400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:13787800-13800600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:13787800-13801200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:13788000-13799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:13788000-13799000	Weak transcription	Right Ventricle	heart
14	chr6:13788000-13799200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:13788000-13799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:13788000-13799200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:13788000-13801200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:13788000-13802600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:13788000-13810600	Weak transcription	Fetal Heart	heart
20	chr6:13788000-13810800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
22	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
24	chr6:13788200-13807600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:13788400-13800800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:13788400-13801200	Weak transcription	Esophagus	oesophagus
27	chr6:13788400-13810600	Weak transcription	Colonic Mucosa	Colon
28	chr6:13788600-13797400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:13788600-13810800	Weak transcription	Stomach Mucosa	stomach
30	chr6:13788800-13810600	Weak transcription	Small Intestine	intestine
31	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:13789000-13799000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:13789600-13801000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:13789600-13803800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:13790000-13799400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:13790400-13799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:13790800-13799200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:13790800-13799400	Weak transcription	Fetal Lung	lung
40	chr6:13791200-13798800	Weak transcription	Hela-S3	cervix
41	chr6:13792400-13797000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:13792400-13798400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:13792400-13799000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:13792400-13802600	Weak transcription	Pancreas	Pancrea
45	chr6:13792600-13799000	Weak transcription	HSMMtube	muscle
46	chr6:13792600-13810800	Weak transcription	Spleen	Spleen
47	chr6:13792800-13799200	Weak transcription	Brain Substantia Nigra	brain
48	chr6:13793000-13797000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:13793000-13799000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:13793000-13799200	Weak transcription	Left Ventricle	heart

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