Variant report

Variant	rs6901643
Chromosome Location	chr6:13809826-13809827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13800602..13802958-chr6:13809686..13812122,2	K562	blood:
2	chr6:13709898..13714007-chr6:13809605..13814723,8	K562	blood:
3	chr6:13809739..13812067-chr6:13816627..13819617,2	K562	blood:
4	chr6:13709898..13716469-chr6:13809605..13815390,11	K562	blood:

Variant related genes	Relation type
ENSG00000233075	Chromatin interaction
ENSG00000050393	Chromatin interaction
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12197637	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12205827	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12206286	0.91[EUR][1000 genomes]
rs6918488	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv349719	chr6:13805047-13809959	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13788000-13810600	Weak transcription	Fetal Heart	heart
2	chr6:13788000-13810800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
4	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13788400-13810600	Weak transcription	Colonic Mucosa	Colon
7	chr6:13788600-13810800	Weak transcription	Stomach Mucosa	stomach
8	chr6:13788800-13810600	Weak transcription	Small Intestine	intestine
9	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:13792600-13810800	Weak transcription	Spleen	Spleen
12	chr6:13793000-13813200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:13794800-13812200	Weak transcription	HMEC	breast
14	chr6:13795200-13810800	Weak transcription	NHLF	lung
15	chr6:13795400-13812200	Weak transcription	HUVEC	blood vessel
16	chr6:13796000-13811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:13797600-13810600	Strong transcription	Fetal Intestine Small	intestine
18	chr6:13799800-13811400	Weak transcription	Ovary	ovary
19	chr6:13799800-13812000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:13800600-13813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:13801400-13812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:13801400-13813200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:13801600-13811000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:13801600-13813200	Weak transcription	A549	lung
25	chr6:13801800-13812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:13802000-13810800	Weak transcription	Brain Substantia Nigra	brain
27	chr6:13802000-13812200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:13802200-13810600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:13802200-13811000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:13802200-13811800	Weak transcription	Fetal Brain Male	brain
31	chr6:13802600-13810800	Weak transcription	Psoas Muscle	Psoas
32	chr6:13802600-13811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:13802600-13812400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:13802800-13810800	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:13802800-13810800	Weak transcription	Fetal Kidney	kidney
36	chr6:13802800-13810800	Weak transcription	Gastric	stomach
37	chr6:13802800-13810800	Weak transcription	Right Ventricle	heart
38	chr6:13802800-13810800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:13802800-13811000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:13802800-13811000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:13802800-13811000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:13802800-13811000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:13802800-13811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:13802800-13811800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:13802800-13811800	Weak transcription	Left Ventricle	heart
46	chr6:13802800-13812200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:13802800-13813000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:13802800-13813200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:13802800-13813600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:13802800-13813800	Weak transcription	Esophagus	oesophagus

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