Variant report

Variant rs12198461
Chromosome Location chr6:118880640-118880641
allele A/C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:118847800-118895400 Weak transcription Pancreas Pancrea
2 chr6:118852600-118895200 Weak transcription Primary B cells from cord blood blood
3 chr6:118864400-118895200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr6:118868600-118894000 Weak transcription Fetal Stomach stomach
5 chr6:118872200-118886600 Weak transcription Fetal Kidney kidney
6 chr6:118872200-118895200 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr6:118872400-118884000 Weak transcription Brain Angular Gyrus brain
8 chr6:118872400-118886200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr6:118872400-118886600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr6:118872800-118895200 Weak transcription HMEC breast
11 chr6:118873000-118886400 Weak transcription Adipose Nuclei Adipose
12 chr6:118873200-118886400 Weak transcription Fetal Lung lung
13 chr6:118873800-118895600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr6:118874600-118886600 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr6:118874600-118886600 Weak transcription HSMMtube muscle
16 chr6:118874600-118895200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr6:118874600-118895200 Weak transcription K562 blood
18 chr6:118875000-118889200 Weak transcription Placenta Placenta
19 chr6:118875200-118885600 Weak transcription HSMM muscle
20 chr6:118875400-118895200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr6:118875600-118883600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr6:118875600-118886600 Weak transcription Fetal Muscle Leg muscle
23 chr6:118877800-118883400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr6:118877800-118889200 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr6:118877800-118895200 Weak transcription Gastric stomach
26 chr6:118878400-118881200 Enhancers Primary T helper cells fromperipheralblood blood
27 chr6:118878400-118882400 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr6:118878600-118881200 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr6:118878800-118883600 Weak transcription Rectal Smooth Muscle rectum
30 chr6:118878800-118884600 Weak transcription NHEK skin
31 chr6:118878800-118889200 Weak transcription Right Atrium heart
32 chr6:118879000-118881000 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr6:118879200-118881000 Weak transcription Stomach Smooth Muscle stomach
34 chr6:118879200-118883600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr6:118879200-118884000 Weak transcription Osteobl bone
36 chr6:118879600-118881000 Enhancers HUVEC blood vessel
37 chr6:118879800-118880800 Enhancers GM12878-XiMat blood
38 chr6:118879800-118886200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr6:118880000-118880800 Enhancers Brain Substantia Nigra brain
40 chr6:118880000-118881000 Enhancers Duodenum Smooth Muscle Duodenum
41 chr6:118880000-118881200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr6:118880000-118881200 Transcr. at gene 5' and 3' Fetal Heart heart
43 chr6:118880000-118881400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr6:118880000-118881400 Genic enhancers Skeletal Muscle Male skeletal muscle
45 chr6:118880000-118881800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
46 chr6:118880000-118886600 Weak transcription Fetal Muscle Trunk muscle
47 chr6:118880200-118880800 Enhancers Brain Hippocampus Middle brain
48 chr6:118880200-118880800 Enhancers NHLF lung
49 chr6:118880200-118881600 Enhancers NHDF-Ad bronchial
50 chr6:118880200-118882400 Enhancers Primary T helper naive cells from peripheral blood blood

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