Variant report

Variant	rs72952771
Chromosome Location	chr6:118883817-118883818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10456917	0.85[ASN][1000 genomes]
rs10457330	0.83[ASN][1000 genomes]
rs10457331	0.83[ASN][1000 genomes]
rs10457335	0.85[ASN][1000 genomes]
rs10457337	0.86[ASN][1000 genomes]
rs10457338	0.85[ASN][1000 genomes]
rs10457342	0.82[ASN][1000 genomes]
rs10872167	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11153732	0.81[ASN][1000 genomes]
rs11153734	0.83[ASN][1000 genomes]
rs11153748	0.85[ASN][1000 genomes]
rs11153752	0.89[ASN][1000 genomes]
rs11153753	0.89[ASN][1000 genomes]
rs11153759	0.90[ASN][1000 genomes]
rs11153763	0.83[ASN][1000 genomes]
rs11153767	0.82[ASN][1000 genomes]
rs11153768	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11752626	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11752928	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11753128	0.90[ASN][1000 genomes]
rs11755121	0.90[ASN][1000 genomes]
rs11758454	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11965985	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11967375	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11967858	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11968351	0.90[ASN][1000 genomes]
rs11970286	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12192682	0.94[ASN][1000 genomes]
rs12192964	0.83[ASN][1000 genomes]
rs12194555	0.88[ASN][1000 genomes]
rs12197337	0.93[ASN][1000 genomes]
rs12198461	0.92[ASN][1000 genomes]
rs12199463	0.90[ASN][1000 genomes]
rs12203006	0.90[ASN][1000 genomes]
rs12206329	0.94[ASN][1000 genomes]
rs12207209	0.90[ASN][1000 genomes]
rs12208253	0.85[ASN][1000 genomes]
rs12211576	0.94[ASN][1000 genomes]
rs12214483	0.85[ASN][1000 genomes]
rs12215793	0.81[ASN][1000 genomes]
rs12660455	0.83[ASN][1000 genomes]
rs12661338	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13191610	0.83[ASN][1000 genomes]
rs13192336	0.94[ASN][1000 genomes]
rs13192574	0.94[ASN][1000 genomes]
rs13217710	0.88[ASN][1000 genomes]
rs13219555	0.89[ASN][1000 genomes]
rs13220480	0.90[ASN][1000 genomes]
rs17226667	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17227124	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17427116	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17825393	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17825652	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2078383	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2184402	0.85[ASN][1000 genomes]
rs2213856	0.88[ASN][1000 genomes]
rs2213857	0.87[ASN][1000 genomes]
rs2356183	0.85[ASN][1000 genomes]
rs2356492	0.87[ASN][1000 genomes]
rs2356497	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356498	0.90[ASN][1000 genomes]
rs2883956	0.83[ASN][1000 genomes]
rs34479834	0.90[ASN][1000 genomes]
rs35029749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35730412	0.83[ASN][1000 genomes]
rs35962656	0.90[ASN][1000 genomes]
rs3752581	0.94[ASN][1000 genomes]
rs3798420	0.85[ASN][1000 genomes]
rs3890198	0.83[ASN][1000 genomes]
rs3951042	0.83[ASN][1000 genomes]
rs3951043	0.83[ASN][1000 genomes]
rs4027880	0.83[ASN][1000 genomes]
rs4307206	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945623	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946347	0.91[ASN][1000 genomes]
rs4946350	0.83[ASN][1000 genomes]
rs55892056	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57813349	0.83[ASN][1000 genomes]
rs59671368	0.90[ASN][1000 genomes]
rs6569020	0.87[ASN][1000 genomes]
rs6569024	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67832971	0.90[ASN][1000 genomes]
rs6902812	0.85[ASN][1000 genomes]
rs6906287	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6925641	0.90[ASN][1000 genomes]
rs6936178	0.83[ASN][1000 genomes]
rs6938041	0.90[ASN][1000 genomes]
rs6938226	0.90[ASN][1000 genomes]
rs72952795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72958930	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs763254	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740645	0.85[ASN][1000 genomes]
rs7746778	0.82[ASN][1000 genomes]
rs7751467	0.90[ASN][1000 genomes]
rs7757892	0.89[ASN][1000 genomes]
rs7758614	0.90[ASN][1000 genomes]
rs7763596	0.90[ASN][1000 genomes]
rs7766375	0.88[ASN][1000 genomes]
rs7769001	0.85[ASN][1000 genomes]
rs7772214	0.86[ASN][1000 genomes]
rs7772921	0.82[ASN][1000 genomes]
rs7773274	0.85[ASN][1000 genomes]
rs973944	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1020586	chr6:118711098-118900012	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
16	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
17	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
18	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
19	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
20	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	esv275552	chr6:118878758-118887215	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118847800-118895400	Weak transcription	Pancreas	Pancrea
2	chr6:118852600-118895200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:118864400-118895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:118868600-118894000	Weak transcription	Fetal Stomach	stomach
5	chr6:118872200-118886600	Weak transcription	Fetal Kidney	kidney
6	chr6:118872200-118895200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:118872400-118884000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:118872400-118886200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:118872400-118886600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:118872800-118895200	Weak transcription	HMEC	breast
11	chr6:118873000-118886400	Weak transcription	Adipose Nuclei	Adipose
12	chr6:118873200-118886400	Weak transcription	Fetal Lung	lung
13	chr6:118873800-118895600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:118874600-118886600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:118874600-118886600	Weak transcription	HSMMtube	muscle
16	chr6:118874600-118895200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:118874600-118895200	Weak transcription	K562	blood
18	chr6:118875000-118889200	Weak transcription	Placenta	Placenta
19	chr6:118875200-118885600	Weak transcription	HSMM	muscle
20	chr6:118875400-118895200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:118875600-118886600	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:118877800-118889200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:118877800-118895200	Weak transcription	Gastric	stomach
24	chr6:118878800-118884600	Weak transcription	NHEK	skin
25	chr6:118878800-118889200	Weak transcription	Right Atrium	heart
26	chr6:118879200-118884000	Weak transcription	Osteobl	bone
27	chr6:118879800-118886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:118880000-118886600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:118880200-118884000	Weak transcription	Psoas Muscle	Psoas
30	chr6:118880200-118885200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:118880200-118886600	Weak transcription	Thymus	Thymus
32	chr6:118880200-118890000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:118880400-118886200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:118880400-118886600	Weak transcription	NH-A	brain
35	chr6:118880400-118889200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:118880400-118895200	Weak transcription	Left Ventricle	heart
37	chr6:118880400-118895200	Weak transcription	Right Ventricle	heart
38	chr6:118880600-118884000	Weak transcription	Brain Anterior Caudate	brain
39	chr6:118880600-118886000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:118880600-118889400	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:118880800-118884200	Weak transcription	Brain Substantia Nigra	brain
42	chr6:118880800-118886400	Weak transcription	GM12878-XiMat	blood
43	chr6:118880800-118894400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:118880800-118895000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:118881000-118886400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:118881000-118889200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:118881000-118895200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:118881200-118884000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:118881200-118886400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:118881200-118886400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links