Variant report

Variant	rs12198989
Chromosome Location	chr6:71939319-71939320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12153815	0.95[ASN][1000 genomes]
rs12194252	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12665552	0.98[ASN][1000 genomes]
rs13206917	0.91[ASN][1000 genomes]
rs4286730	0.96[ASN][1000 genomes]
rs4498311	0.96[ASN][1000 genomes]
rs4707902	0.89[ASN][1000 genomes]
rs6907080	0.94[ASN][1000 genomes]
rs7739443	0.98[ASN][1000 genomes]
rs7772666	0.96[ASN][1000 genomes]
rs9294888	0.94[ASN][1000 genomes]
rs9342824	0.98[ASN][1000 genomes]
rs9354978	0.94[ASN][1000 genomes]
rs9354980	0.89[ASN][1000 genomes]
rs9354981	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5341	chr6:71925073-71956936	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71931200-71939400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:71936600-71939600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:71936800-71939600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:71937200-71940000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:71937200-71940200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:71937200-71940200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:71937400-71939800	Weak transcription	Fetal Thymus	thymus
8	chr6:71937400-71940200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:71937400-71946600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:71937800-71939800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:71937800-71940200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:71938400-71939600	Enhancers	Osteobl	bone
13	chr6:71938400-71940000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:71938400-71940000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:71938400-71940000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:71938400-71940200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:71938400-71940600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:71938600-71942600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:71938800-71941000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:71938800-71941200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:71939000-71940000	Enhancers	Primary T cells from cord blood	blood
22	chr6:71939200-71939600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:71939200-71939600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:71939200-71940000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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