Variant report

Variant	rs9354980
Chromosome Location	chr6:71940395-71940396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12153815	0.85[ASN][1000 genomes]
rs12194252	0.89[ASN][1000 genomes]
rs12198989	0.89[ASN][1000 genomes]
rs12665552	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13206917	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4286730	0.89[ASN][1000 genomes]
rs4498311	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4583944	0.84[AFR][1000 genomes]
rs4707902	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907080	0.87[ASN][1000 genomes]
rs7739443	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7772666	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9294888	0.87[ASN][1000 genomes]
rs9342824	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9354978	0.87[ASN][1000 genomes]
rs9354981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5341	chr6:71925073-71956936	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71937400-71946600	Weak transcription	Primary B cells from cord blood	blood
2	chr6:71938400-71940600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:71938600-71942600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:71938800-71941000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:71938800-71941200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:71940200-71945800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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