Variant report

Variant	rs12199964
Chromosome Location	chr6:80088638-80088639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12199976	0.90[ASN][1000 genomes]
rs3857448	0.85[ASN][1000 genomes]
rs6922909	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9352726	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9352728	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80087800-80094600	Weak transcription	Pancreas	Pancrea
2	chr6:80087800-80094800	Weak transcription	Aorta	Aorta
3	chr6:80088000-80091800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:80088000-80094400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:80088200-80089200	Enhancers	HUVEC	blood vessel
6	chr6:80088200-80093000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:80088200-80093200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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