Variant report

Variant	rs9352728
Chromosome Location	chr6:80085732-80085733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12199964	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12199976	0.81[ASN][1000 genomes]
rs3857448	1.00[ASN][1000 genomes]
rs6922909	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9352726	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80084000-80086800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:80084000-80086800	Weak transcription	Stomach Mucosa	stomach
3	chr6:80084000-80086800	Weak transcription	NHEK	skin
4	chr6:80084000-80087400	Weak transcription	Placenta	Placenta
5	chr6:80084200-80086800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:80084200-80087400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:80084400-80087400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:80084400-80087400	Weak transcription	Hela-S3	cervix
9	chr6:80084800-80086200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:80084800-80086800	Enhancers	HUVEC	blood vessel
11	chr6:80085000-80087400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:80085400-80086000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:80085400-80088000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:80085600-80086400	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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