Variant report

Variant	rs3857448
Chromosome Location	chr6:80086885-80086886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12199964	0.85[ASN][1000 genomes]
rs12199976	0.81[ASN][1000 genomes]
rs6922909	0.81[ASN][1000 genomes]
rs9352728	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80084000-80087400	Weak transcription	Placenta	Placenta
2	chr6:80084200-80087400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:80084400-80087400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:80084400-80087400	Weak transcription	Hela-S3	cervix
5	chr6:80085000-80087400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:80085400-80088000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:80085800-80087400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:80086600-80088200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:80086800-80087000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:80086800-80087000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:80086800-80087000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:80086800-80087000	Flanking Active TSS	HUVEC	blood vessel
13	chr6:80086800-80087400	Enhancers	A549	lung
14	chr6:80086800-80087600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:80086800-80087800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:80086800-80087800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:80086800-80087800	Enhancers	HMEC	breast
18	chr6:80086800-80087800	Enhancers	HSMM	muscle
19	chr6:80086800-80087800	Enhancers	NHLF	lung
20	chr6:80086800-80088000	Enhancers	NHEK	skin
21	chr6:80086800-80088200	Enhancers	Fetal Kidney	kidney
22	chr6:80086800-80088200	Enhancers	Stomach Mucosa	stomach

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