Variant report

Variant	rs12201042
Chromosome Location	chr6:36133453-36133454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10447375	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10447396	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10947589	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12193895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12199702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12201072	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2007683	0.81[AMR][1000 genomes]
rs2859135	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2859136	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2859137	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2859141	0.81[AMR][1000 genomes]
rs6940723	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12201042	MAPK13	Cis_1M	lymphoblastoid	RTeQTL
rs12201042	MAPK13	cis	Skin Sun Exposed Lower leg	GTEx
rs12201042	MAPK13	cis	Esophagus Mucosa	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36110000-36145000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:36110200-36137200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:36118600-36145800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:36128400-36145800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:36128600-36149800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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