Variant report

Variant	rs6940723
Chromosome Location	chr6:36116661-36116662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10447375	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10447396	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059227	0.96[ASN][1000 genomes]
rs10947589	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12193895	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12199702	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12201042	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12201072	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12210946	0.86[ASN][1000 genomes]
rs2007683	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2859135	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2859136	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2859137	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2859141	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6940723	MAPK13	Cis_1M	lymphoblastoid	RTeQTL
rs6940723	MAPK13	cis	Esophagus Mucosa	GTEx
rs6940723	MAPK13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
2	chr6:36100400-36117400	Weak transcription	Fetal Lung	lung
3	chr6:36100400-36118600	Weak transcription	Small Intestine	intestine
4	chr6:36101200-36129400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:36108400-36117400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:36108400-36117400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:36110000-36145000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:36110200-36137200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:36110400-36117600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:36111600-36117400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:36112000-36117400	Weak transcription	Placenta	Placenta
12	chr6:36115000-36117600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:36115200-36118000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:36115200-36118600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:36115600-36117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:36115600-36117400	Weak transcription	HepG2	liver
17	chr6:36115800-36117800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:36116000-36118000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:36116200-36117400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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