Variant report

Variant	rs2859137
Chromosome Location	chr6:36108329-36108330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36105269..36110195-chr6:36162724..36166768,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10447375	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10447396	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1059227	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10947589	0.86[AMR][1000 genomes]
rs12193895	0.84[AMR][1000 genomes]
rs12199702	0.84[AMR][1000 genomes]
rs12201042	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12201072	0.84[AMR][1000 genomes]
rs12210904	0.84[AMR][1000 genomes]
rs2007683	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2859135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859136	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859141	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4711433	0.83[AMR][1000 genomes]
rs6940723	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2859137	MAPK13	cis	Skin Sun Exposed Lower leg	GTEx
rs2859137	MAPK13	cis	Esophagus Mucosa	GTEx
rs2859137	MAPK13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36099200-36117400	Weak transcription	Psoas Muscle	Psoas
2	chr6:36099800-36113400	Weak transcription	Right Atrium	heart
3	chr6:36100000-36109600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:36100200-36111000	Weak transcription	Adipose Nuclei	Adipose
5	chr6:36100200-36111000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:36100200-36115000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:36100400-36109400	Weak transcription	Osteobl	bone
8	chr6:36100400-36117400	Weak transcription	Fetal Lung	lung
9	chr6:36100400-36118600	Weak transcription	Small Intestine	intestine
10	chr6:36100600-36108800	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:36100600-36110000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:36100800-36114600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:36101000-36108800	Strong transcription	Fetal Stomach	stomach
14	chr6:36101000-36109000	Weak transcription	Stomach Mucosa	stomach
15	chr6:36101200-36108400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:36101200-36109000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:36101200-36129400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:36101400-36109000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr6:36101400-36114600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:36102000-36108400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:36102000-36110200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:36103000-36108400	Strong transcription	Pancreas	Pancrea
23	chr6:36103000-36108600	Strong transcription	Placenta	Placenta
24	chr6:36103200-36108400	Strong transcription	Lung	lung
25	chr6:36103400-36108800	Strong transcription	Colonic Mucosa	Colon
26	chr6:36104200-36110200	Weak transcription	NHEK	skin
27	chr6:36104600-36111200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:36104800-36108800	Strong transcription	Primary B cells from cord blood	blood
29	chr6:36104800-36109800	Weak transcription	GM12878-XiMat	blood
30	chr6:36104800-36114600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:36105400-36110200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr6:36105600-36108800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:36106400-36110200	Weak transcription	NHLF	lung
34	chr6:36106600-36110200	Strong transcription	Fetal Intestine Large	intestine
35	chr6:36106600-36112400	Strong transcription	Fetal Intestine Small	intestine
36	chr6:36106800-36110400	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr6:36107000-36108400	Enhancers	Fetal Heart	heart
38	chr6:36107000-36108600	Enhancers	Fetal Muscle Leg	muscle
39	chr6:36107000-36108800	Enhancers	HSMMtube	muscle
40	chr6:36107200-36108600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:36107200-36108800	Enhancers	Fetal Muscle Trunk	muscle
42	chr6:36107200-36108800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:36107200-36111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:36107400-36108400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:36107400-36108400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:36107400-36108400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:36107400-36108400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:36107400-36108400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr6:36107400-36108400	Enhancers	Fetal Brain Male	brain
50	chr6:36107400-36108400	Enhancers	Skeletal Muscle Female	skeletal muscle

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