Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55412158..55414482-chr6:55747955..55749467,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10456714	0.80[EUR][1000 genomes]
rs12196868	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12199583	0.93[ASN][1000 genomes]
rs12212353	0.93[ASN][1000 genomes]
rs12215544	0.81[ASN][1000 genomes]
rs12216528	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4323306	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520003	0.85[ASN][1000 genomes]
rs4529292	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715554	0.93[ASN][1000 genomes]
rs4715555	0.82[JPT][hapmap]
rs62404044	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62405366	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62405367	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62405368	0.81[ASN][1000 genomes]
rs62405400	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62407367	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72986078	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72986089	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7762185	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9382502	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9382504	0.82[AMR][1000 genomes]
rs9396103	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9464263	0.85[ASN][1000 genomes]
rs9475343	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948358	chr6:55351282-55477277	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55400400-55418600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:55412400-55412600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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