Variant report

Variant	rs9382504
Chromosome Location	chr6:55397972-55397973
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10456714	0.86[EUR][1000 genomes]
rs12196868	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12201934	0.82[AMR][1000 genomes]
rs12216528	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4323306	0.80[AMR][1000 genomes]
rs4520003	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4529292	0.83[AMR][1000 genomes]
rs62404044	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62405366	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62405367	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405400	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72986089	0.80[AMR][1000 genomes]
rs7762185	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9382502	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9396103	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9464263	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9475343	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948358	chr6:55351282-55477277	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55376400-55399200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:55384400-55410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:55394000-55407200	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links