Variant report

Variant	rs12202553
Chromosome Location	chr6:82728351-82728352
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12190391	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12199970	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12203975	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12208013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12215979	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1342195	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361689	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1361691	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1361694	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1418303	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1582218	0.83[AFR][1000 genomes]
rs1935423	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61567042	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9344241	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9344242	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9344243	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9350942	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9353048	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9361882	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9361883	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9361884	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020783	chr6:82720632-82732325	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1020964	chr6:82725168-82737456	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82723000-82728400	Enhancers	HMEC	breast
2	chr6:82725200-82731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:82725400-82731800	Weak transcription	NH-A	brain
4	chr6:82725600-82728400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:82725600-82728600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:82726000-82728400	Enhancers	Adipose Nuclei	Adipose
7	chr6:82726200-82728400	Enhancers	Osteobl	bone
8	chr6:82727000-82728400	Enhancers	Aorta	Aorta
9	chr6:82727200-82731600	Weak transcription	Fetal Heart	heart
10	chr6:82727200-82732200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:82727200-82732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:82727400-82731400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:82727400-82732000	Weak transcription	A549	lung
14	chr6:82727400-82732000	Weak transcription	HepG2	liver
15	chr6:82727400-82732200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:82727400-82732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:82727600-82730200	Weak transcription	HUVEC	blood vessel
18	chr6:82727600-82731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:82727600-82732200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:82727800-82728400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:82727800-82730200	Weak transcription	NHEK	skin
22	chr6:82727800-82731400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:82727800-82731600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:82727800-82731800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:82727800-82732000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:82727800-82732000	Weak transcription	Placenta	Placenta
27	chr6:82727800-82732000	Weak transcription	HSMM	muscle
28	chr6:82727800-82732200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:82727800-82732200	Weak transcription	HSMMtube	muscle
30	chr6:82728000-82728600	Enhancers	Right Atrium	heart
31	chr6:82728000-82729600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:82728000-82732000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:82728000-82732000	Weak transcription	NHLF	lung
34	chr6:82728000-82733200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:82728200-82728400	Enhancers	Psoas Muscle	Psoas
36	chr6:82728200-82730000	Weak transcription	NHDF-Ad	bronchial
37	chr6:82728200-82731600	Weak transcription	Fetal Intestine Large	intestine
38	chr6:82728200-82731600	Weak transcription	Hela-S3	cervix
39	chr6:82728200-82731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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