Variant report

Variant	rs12208013
Chromosome Location	chr6:82727784-82727785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12190391	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12199970	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12202553	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12203975	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215979	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1342195	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1361689	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1361691	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1361694	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1418303	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1935423	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61567042	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344241	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344242	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9344243	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9350942	0.96[EUR][1000 genomes]
rs9353048	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361882	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9361883	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361884	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020783	chr6:82720632-82732325	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1020964	chr6:82725168-82737456	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82722400-82728200	Enhancers	Hela-S3	cervix
2	chr6:82722800-82728000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:82723000-82727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:82723000-82728400	Enhancers	HMEC	breast
5	chr6:82723600-82727800	Enhancers	HSMM	muscle
6	chr6:82724000-82728000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:82724200-82727800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:82725000-82728200	Weak transcription	Psoas Muscle	Psoas
9	chr6:82725200-82731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:82725400-82728200	Enhancers	NHDF-Ad	bronchial
11	chr6:82725400-82731800	Weak transcription	NH-A	brain
12	chr6:82725600-82727800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr6:82725600-82728400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:82725600-82728600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:82726000-82728200	Enhancers	Fetal Intestine Large	intestine
16	chr6:82726000-82728400	Enhancers	Adipose Nuclei	Adipose
17	chr6:82726200-82727800	Enhancers	NHEK	skin
18	chr6:82726200-82728000	Enhancers	Colon Smooth Muscle	Colon
19	chr6:82726200-82728200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:82726200-82728400	Enhancers	Osteobl	bone
21	chr6:82726400-82727800	Enhancers	HSMMtube	muscle
22	chr6:82726800-82727800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:82726800-82727800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:82726800-82727800	Enhancers	Fetal Intestine Small	intestine
25	chr6:82726800-82727800	Enhancers	Placenta	Placenta
26	chr6:82726800-82728000	Enhancers	NHLF	lung
27	chr6:82727000-82728400	Enhancers	Aorta	Aorta
28	chr6:82727200-82727800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:82727200-82731600	Weak transcription	Fetal Heart	heart
30	chr6:82727200-82732200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:82727200-82732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:82727400-82731400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:82727400-82732000	Weak transcription	A549	lung
34	chr6:82727400-82732000	Weak transcription	HepG2	liver
35	chr6:82727400-82732200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:82727400-82732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:82727600-82727800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:82727600-82728000	Weak transcription	Right Atrium	heart
39	chr6:82727600-82730200	Weak transcription	HUVEC	blood vessel
40	chr6:82727600-82731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:82727600-82732200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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