Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12190391	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12199970	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12202553	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12203975	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208013	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12215979	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1342195	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1361689	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1361691	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1361694	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418303	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61567042	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344241	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344242	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9344243	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9350942	0.90[EUR][1000 genomes]
rs9353048	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9361882	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9361883	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9361884	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020964	chr6:82725168-82737456	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1935423	PGM3	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82732400-82748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:82732800-82738600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:82733000-82740400	Weak transcription	HepG2	liver
4	chr6:82733200-82739800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82733200-82743800	Weak transcription	HSMM	muscle
6	chr6:82733800-82740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:82734000-82739600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:82735600-82740200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:82735600-82740200	Weak transcription	NHDF-Ad	bronchial
10	chr6:82735600-82740600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:82736600-82739200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:82736600-82743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82737200-82739600	Weak transcription	HMEC	breast

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