Variant report

Variant	rs12204657
Chromosome Location	chr6:150513703-150513704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12215988	0.85[CEU][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1358727	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2038773	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2038774	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4289668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6927415	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9371344	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9371803	0.90[CHB][hapmap]
rs9383711	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9383714	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9384220	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs9384225	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397193	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397722	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9397726	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9397729	0.82[LWK][hapmap]
rs9479861	0.92[EUR][1000 genomes]
rs9479881	0.85[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12204657	UNQ830	trans	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150508400-150517000	Weak transcription	K562	blood
4	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
5	chr6:150510800-150514800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:150511000-150513800	Enhancers	NHEK	skin
7	chr6:150511200-150513800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:150512000-150514000	Enhancers	HMEC	breast
9	chr6:150512200-150513800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:150512400-150514000	Weak transcription	Left Ventricle	heart
11	chr6:150512600-150514600	Weak transcription	Right Atrium	heart
12	chr6:150512800-150514000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:150513200-150513800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:150513400-150514200	Weak transcription	Fetal Heart	heart
15	chr6:150513600-150517200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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