Variant report

Variant	rs9479881
Chromosome Location	chr6:150505092-150505093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:
2	chr6:150502431..150505236-chr6:150510724..150512561,2	K562	blood:
3	chr6:150491837..150493416-chr6:150504605..150507001,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12204657	0.85[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs12215988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1358727	0.92[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2038773	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038774	0.82[GIH][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs4289668	0.85[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6927415	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9371344	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9383711	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9383714	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs9384225	0.92[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9397193	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9397722	0.85[CEU][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9397726	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9479861	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150497800-150511000	Weak transcription	NHEK	skin
3	chr6:150499600-150505200	Weak transcription	Right Ventricle	heart
4	chr6:150499600-150506000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
7	chr6:150502000-150506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:150502000-150506400	Weak transcription	Esophagus	oesophagus
9	chr6:150502000-150506400	Weak transcription	HMEC	breast
10	chr6:150502400-150505200	Weak transcription	Left Ventricle	heart
11	chr6:150502400-150505400	Weak transcription	K562	blood
12	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
13	chr6:150503400-150507400	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
16	chr6:150503800-150505200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:150504200-150505200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:150504200-150505400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:150504200-150505400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:150504200-150506200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:150504600-150505400	Enhancers	Colonic Mucosa	Colon
23	chr6:150504600-150507800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:150504800-150505200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:150504800-150506200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:150504800-150508000	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:150505000-150505400	Weak transcription	Lung	lung
28	chr6:150505000-150506600	Enhancers	GM12878-XiMat	blood

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