Variant report

Variant	rs1358727
Chromosome Location	chr6:150504354-150504355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:
2	chr6:150502431..150505236-chr6:150510724..150512561,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12204657	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12215988	0.92[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2038773	0.89[EUR][1000 genomes]
rs2038774	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4289668	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905409	0.88[MEX][hapmap]
rs6927415	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9371344	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9371803	0.95[CHB][hapmap]
rs9383711	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9383714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384220	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9384225	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397193	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397722	0.92[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9397726	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9479861	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9479881	0.92[CEU][hapmap];0.92[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1358727	MYCT1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150497800-150511000	Weak transcription	NHEK	skin
3	chr6:150499600-150504600	Weak transcription	Colonic Mucosa	Colon
4	chr6:150499600-150505200	Weak transcription	Right Ventricle	heart
5	chr6:150499600-150506000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
8	chr6:150502000-150506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:150502000-150506400	Weak transcription	Esophagus	oesophagus
10	chr6:150502000-150506400	Weak transcription	HMEC	breast
11	chr6:150502400-150505200	Weak transcription	Left Ventricle	heart
12	chr6:150502400-150505400	Weak transcription	K562	blood
13	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
14	chr6:150502600-150504800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:150503400-150507400	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
18	chr6:150503800-150504600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:150503800-150504600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:150503800-150504800	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:150503800-150504800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:150503800-150505200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:150504200-150504800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:150504200-150504800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:150504200-150505200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:150504200-150505400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150504200-150505400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:150504200-150506200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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