Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:73859137-73881637..6:74099986-74112890	GM12878	blood:
2	chr6:74102482..74106495-chr6:74159619..74163030,5	MCF-7	breast:
3	chr6:74101120..74105028-chr6:74169928..74173303,3	K562	blood:
4	chr6:74099074..74102810-chr6:74103260..74106649,3	K562	blood:
5	6:74000304-74012200..6:74099986-74112890	H1-hESC	embryonic stem cell:	embryo
6	chr6:74019175..74020751-chr6:74101665..74105754,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12191034	1.00[AFR][1000 genomes]
rs12194939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12198839	1.00[AFR][1000 genomes]
rs12201569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204785	1.00[AFR][1000 genomes]
rs12205725	1.00[AFR][1000 genomes]
rs12206493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206527	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212088	1.00[AFR][1000 genomes]
rs12212251	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34253887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41265519	1.00[AFR][1000 genomes]
rs510852	0.89[EUR][1000 genomes]
rs522858	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55776330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55884910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56375536	1.00[AFR][1000 genomes]
rs62440579	1.00[EUR][1000 genomes]
rs62440583	1.00[EUR][1000 genomes]
rs62440592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74099200-74104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:74099200-74104400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:74099200-74104400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:74099200-74104400	Weak transcription	Thymus	Thymus
5	chr6:74099200-74110200	Weak transcription	Right Atrium	heart
6	chr6:74099400-74103400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:74099400-74104600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:74099800-74104600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:74101800-74108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:74102000-74104400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:74102000-74104400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:74102000-74104600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:74102200-74104400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:74102200-74105400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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