Variant report

Variant	rs41265519
Chromosome Location	chr6:74127543-74127544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:74099986-74112890..6:74126855-74128780	GM12878	blood:
2	chr6:74117628..74120128-chr6:74125785..74127778,2	K562	blood:
3	6:74078047-74099067..6:74126855-74128780	GM12878	blood:
4	chr6:74127337..74129717-chr6:74130482..74134452,3	K562	blood:

Variant related genes	Relation type
ENSG00000203907	Chromatin interaction
ENSG00000080007	Chromatin interaction
ENSG00000224221	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000235174	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12191034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12198839	1.00[AFR][1000 genomes]
rs12201569	1.00[AFR][1000 genomes]
rs12204785	1.00[AFR][1000 genomes]
rs12205147	1.00[AFR][1000 genomes]
rs12205725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12209309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12211460	1.00[AFR][1000 genomes]
rs12212088	1.00[AFR][1000 genomes]
rs12213727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55899720	1.00[EUR][1000 genomes]
rs56375536	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74115000-74131000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:74115800-74131200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:74117800-74131800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:74119200-74149000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:74120600-74131200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:74121800-74127800	Weak transcription	K562	blood
7	chr6:74122200-74131200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:74122400-74131200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:74122800-74131400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:74123000-74130200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:74123200-74160200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:74124000-74128200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:74124000-74130000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:74124000-74131400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:74124400-74131400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:74124400-74139800	Weak transcription	NHDF-Ad	bronchial
17	chr6:74124600-74131200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:74124600-74131400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:74124600-74131400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:74124800-74129800	Weak transcription	GM12878-XiMat	blood
21	chr6:74124800-74130000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:74124800-74131200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:74124800-74131400	Weak transcription	A549	lung
24	chr6:74125200-74131400	Weak transcription	Left Ventricle	heart
25	chr6:74125200-74131600	Weak transcription	Aorta	Aorta
26	chr6:74125400-74160800	Weak transcription	Gastric	stomach
27	chr6:74125600-74129000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:74125600-74131800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:74125800-74127600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:74125800-74131200	Weak transcription	Fetal Intestine Small	intestine
31	chr6:74126200-74131400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:74126400-74137200	Weak transcription	Placenta	Placenta
33	chr6:74126600-74154200	Weak transcription	Thymus	Thymus
34	chr6:74126800-74128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:74127000-74127800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:74127400-74131400	Weak transcription	Lung	lung
37	chr6:74127400-74155800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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