Variant report

Variant	rs12213727
Chromosome Location	chr6:74118927-74118928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12191034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12194939	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12201569	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12204785	1.00[CEU][hapmap]
rs12205725	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12206527	1.00[AFR][1000 genomes]
rs12209309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214308	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12214703	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs41265519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55899720	1.00[EUR][1000 genomes]
rs62440592	1.00[AFR][1000 genomes]
rs7761170	1.00[CEU][hapmap]
rs7763873	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74115000-74131000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:74115800-74131200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:74117200-74120400	Strong transcription	Placenta	Placenta
4	chr6:74117400-74123000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:74117800-74131800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:74118600-74125600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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