Variant report

Variant	rs12206398
Chromosome Location	chr6:149218488-149218489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12201978	0.97[ASN][1000 genomes]
rs13215793	0.88[ASN][1000 genomes]
rs34595552	0.97[ASN][1000 genomes]
rs35486798	0.94[ASN][1000 genomes]
rs66563107	0.94[ASN][1000 genomes]
rs67087050	0.97[ASN][1000 genomes]
rs67521789	0.97[ASN][1000 genomes]
rs67786917	0.97[ASN][1000 genomes]
rs6914084	0.94[ASN][1000 genomes]
rs7759291	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv464074	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604844	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:149207800-149219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:149207800-149221400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:149207800-149237400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:149208000-149229800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:149209800-149230800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:149210000-149220800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:149210200-149230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:149210200-149240200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:149210400-149226200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:149210400-149235000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:149210800-149226000	Weak transcription	Esophagus	oesophagus
14	chr6:149211000-149221000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:149211000-149221400	Weak transcription	Lung	lung
16	chr6:149211600-149226400	Weak transcription	Left Ventricle	heart
17	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:149212200-149230200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:149212600-149219800	Weak transcription	Ovary	ovary
20	chr6:149212600-149222200	Weak transcription	Aorta	Aorta
21	chr6:149212600-149225000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:149213200-149233400	Weak transcription	Fetal Heart	heart
23	chr6:149213400-149222400	Weak transcription	Gastric	stomach
24	chr6:149215200-149226200	Weak transcription	Fetal Stomach	stomach
25	chr6:149215400-149221400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:149217600-149236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:149218200-149219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:149218200-149220800	Weak transcription	H9 Cell Line	embryonic stem cell

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