Variant report

Variant	rs35486798
Chromosome Location	chr6:149220534-149220535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12201978	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206398	0.94[ASN][1000 genomes]
rs13215793	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34595552	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35222034	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66563107	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67087050	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67521789	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67786917	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914084	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759291	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv464074	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604844	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149207800-149221400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:149207800-149237400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:149208000-149229800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:149209800-149230800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:149210000-149220800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:149210200-149230200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:149210200-149240200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:149210400-149226200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:149210400-149235000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:149210800-149226000	Weak transcription	Esophagus	oesophagus
12	chr6:149211000-149221000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:149211000-149221400	Weak transcription	Lung	lung
14	chr6:149211600-149226400	Weak transcription	Left Ventricle	heart
15	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:149212200-149230200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:149212600-149222200	Weak transcription	Aorta	Aorta
18	chr6:149212600-149225000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:149213200-149233400	Weak transcription	Fetal Heart	heart
20	chr6:149213400-149222400	Weak transcription	Gastric	stomach
21	chr6:149215200-149226200	Weak transcription	Fetal Stomach	stomach
22	chr6:149215400-149221400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:149217600-149236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:149218200-149220800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:149220200-149221000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:149220200-149222200	Weak transcription	HSMMtube	muscle
27	chr6:149220200-149223200	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:149220400-149220800	Weak transcription	Ovary	ovary

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