Variant report

Variant	rs34595552
Chromosome Location	chr6:149230233-149230234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12201978	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206398	0.97[ASN][1000 genomes]
rs13215793	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35222034	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35486798	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66563107	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67087050	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67521789	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67786917	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914084	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7759291	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv464074	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv604844	chr6:149211090-149242095	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv464075	chr6:149221294-149242095	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470865	chr6:149221294-149242095	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604845	chr6:149221294-149242095	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149207800-149237400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:149209800-149230800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:149210200-149240200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:149210400-149235000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:149213200-149233400	Weak transcription	Fetal Heart	heart
8	chr6:149217600-149236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:149221000-149230600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:149222400-149230600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:149225400-149233400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:149226600-149255600	Weak transcription	Ovary	ovary
14	chr6:149226800-149232200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:149227200-149236400	Weak transcription	Fetal Stomach	stomach
16	chr6:149227400-149240400	Weak transcription	Pancreas	Pancrea
17	chr6:149229800-149230800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:149230200-149230800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:149230200-149231000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:149230200-149231000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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