Variant report

Variant	rs12207668
Chromosome Location	chr6:25586392-25586393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10456322	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10456323	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12192331	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12192342	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12207791	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12214693	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs150533	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs184202	0.83[EUR][1000 genomes]
rs212927	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212931	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212932	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212937	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212940	0.85[EUR][1000 genomes]
rs301376	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs301377	0.83[EUR][1000 genomes]
rs301388	0.83[EUR][1000 genomes]
rs3827502	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs441472	0.83[EUR][1000 genomes]
rs443641	0.82[EUR][1000 genomes]
rs485567	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55633691	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55883446	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56285037	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56383372	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6902158	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6927384	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6931843	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72839082	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72839085	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72839087	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72839088	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72839089	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7738866	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7742338	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9348685	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379774	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3423198	chr6:25585523-25588371	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
7	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:25557200-25591400	Weak transcription	Ovary	ovary
10	chr6:25572000-25622200	Weak transcription	HSMMtube	muscle
11	chr6:25574200-25594200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:25577000-25590600	Weak transcription	Brain Angular Gyrus	brain
13	chr6:25577200-25592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:25577200-25594200	Weak transcription	Brain Substantia Nigra	brain
15	chr6:25577200-25603400	Weak transcription	Fetal Brain Female	brain
16	chr6:25577200-25624800	Weak transcription	Adipose Nuclei	Adipose
17	chr6:25577600-25597200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:25579200-25604600	Weak transcription	Fetal Brain Male	brain
19	chr6:25579600-25588600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:25579600-25593200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:25580000-25588400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:25580000-25590000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:25580200-25597800	Weak transcription	Hela-S3	cervix
24	chr6:25580200-25599000	Weak transcription	NHEK	skin
25	chr6:25580400-25592600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:25580600-25608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:25580600-25610200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr6:25580800-25599600	Weak transcription	Small Intestine	intestine
29	chr6:25581000-25587800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:25581200-25622800	Weak transcription	Colonic Mucosa	Colon
31	chr6:25582000-25594400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:25582000-25611400	Weak transcription	Brain Anterior Caudate	brain
33	chr6:25582000-25626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:25582400-25622200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:25582600-25590400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:25582800-25594400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:25583200-25600600	Weak transcription	Placenta	Placenta
38	chr6:25583400-25592000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:25583600-25588000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:25583600-25588600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:25583600-25590200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:25583600-25598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:25583600-25623200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:25583800-25591600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:25583800-25623200	Weak transcription	Esophagus	oesophagus
46	chr6:25584400-25597400	Weak transcription	NHDF-Ad	bronchial
47	chr6:25584600-25591400	Weak transcription	Fetal Intestine Small	intestine
48	chr6:25584800-25591400	Weak transcription	Aorta	Aorta
49	chr6:25585000-25627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:25585200-25588400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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