Variant report

Variant	rs72839085
Chromosome Location	chr6:25575053-25575054
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25565592..25568269-chr6:25573524..25575761,2	MCF-7	breast:
2	chr6:25568017..25570250-chr6:25574639..25577217,2	K562	blood:
3	chr6:25571886..25573443-chr6:25575045..25577767,2	K562	blood:
4	chr6:25572907..25575782-chr6:25577109..25579936,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10456322	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10456323	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12192331	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12192342	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201249	0.81[ASN][1000 genomes]
rs12207668	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12207791	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214693	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs150533	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs184202	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs212927	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs212929	0.81[AMR][1000 genomes]
rs212931	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs212932	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs212935	0.81[AMR][1000 genomes]
rs212937	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs212940	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2762357	0.81[EUR][1000 genomes]
rs301376	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs301377	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs301388	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3827502	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs441472	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs443641	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs485567	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55633691	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55883446	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56285037	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56383372	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902158	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6918563	0.81[ASN][1000 genomes]
rs6927384	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6931843	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72839082	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72839087	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72839088	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72839089	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738866	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742338	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348685	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379774	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25516800-25606400	Weak transcription	Lung	lung
3	chr6:25522400-25588600	Weak transcription	HMEC	breast
4	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
6	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
9	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
13	chr6:25547200-25600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:25556200-25618000	Weak transcription	Primary B cells from cord blood	blood
15	chr6:25557200-25591400	Weak transcription	Ovary	ovary
16	chr6:25564200-25582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:25564400-25576800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:25565000-25579800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:25565400-25583400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:25565800-25581400	Weak transcription	Fetal Intestine Large	intestine
21	chr6:25566000-25581400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:25566400-25581000	Weak transcription	Aorta	Aorta
23	chr6:25566400-25581600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:25568000-25581400	Weak transcription	Primary T cells from cord blood	blood
25	chr6:25571200-25581600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:25572000-25622200	Weak transcription	HSMMtube	muscle
27	chr6:25574200-25594200	Weak transcription	H9 Cell Line	embryonic stem cell

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