The 2.0 version of rSNPBase

Variant report

Variant rs6918563
Chromosome Location chr6:25622571-25622572
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:25577200-25624800 Weak transcription Adipose Nuclei Adipose
2 chr6:25581200-25622800 Weak transcription Colonic Mucosa Colon
3 chr6:25582000-25626800 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr6:25583600-25623200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr6:25583800-25623200 Weak transcription Esophagus oesophagus
6 chr6:25585000-25627000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr6:25585200-25629400 Weak transcription Pancreas Pancrea
8 chr6:25589200-25623400 Weak transcription HMEC breast
9 chr6:25592400-25625600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr6:25594200-25629200 Weak transcription Fetal Adrenal Gland Adrenal Gland
11 chr6:25594400-25627200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr6:25594600-25627200 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr6:25594600-25629600 Weak transcription H9 Cell Line embryonic stem cell
14 chr6:25594800-25624600 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr6:25595000-25626800 Weak transcription H1 Cell Line embryonic stem cell
16 chr6:25595000-25627000 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr6:25598000-25622800 Weak transcription Gastric stomach
18 chr6:25599200-25622800 Weak transcription Rectal Smooth Muscle rectum
19 chr6:25601600-25626400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr6:25602800-25623600 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr6:25603800-25624000 Weak transcription Fetal Kidney kidney
22 chr6:25609400-25627000 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr6:25610400-25624200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr6:25611000-25622800 Weak transcription Primary T cells fromperipheralblood blood
25 chr6:25611200-25623200 Weak transcription Lung lung
26 chr6:25611600-25625200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr6:25611800-25623000 Weak transcription Fetal Thymus thymus
28 chr6:25612400-25623600 Weak transcription Ovary ovary
29 chr6:25612800-25623400 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr6:25612800-25626800 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr6:25613200-25624200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr6:25613200-25631000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr6:25613400-25623600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr6:25618600-25623200 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr6:25619000-25623000 Strong transcription Primary T cells from cord blood blood
36 chr6:25619000-25623400 Strong transcription Cortex derived primary cultured neurospheres brain
37 chr6:25619200-25625800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr6:25619400-25625000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr6:25619600-25623800 Weak transcription Primary hematopoietic stem cells blood
40 chr6:25619800-25628600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr6:25620000-25623000 Weak transcription Primary B cells from cord blood blood
42 chr6:25620200-25624400 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr6:25620800-25622800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr6:25620800-25622800 Strong transcription Aorta Aorta
45 chr6:25621200-25622600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr6:25621600-25624600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr6:25621800-25623600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr6:25621800-25623600 Weak transcription Stomach Smooth Muscle stomach
49 chr6:25621800-25623800 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr6:25621800-25624600 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015