Variant report

Variant	rs56285037
Chromosome Location	chr6:25546782-25546783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25545037..25548609-chr6:25549675..25554265,5	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10456322	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456323	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192331	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192342	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12207668	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12207791	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12214693	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1410443	0.81[ASN][1000 genomes]
rs150533	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184202	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212927	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212929	0.81[ASN][1000 genomes]
rs212931	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212932	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212935	0.81[ASN][1000 genomes]
rs212937	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212939	0.81[ASN][1000 genomes]
rs212940	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301376	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301377	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301388	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3827502	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs441472	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453181	0.81[ASN][1000 genomes]
rs485567	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55633691	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55883446	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56383372	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6902158	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927384	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931843	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72839062	0.83[AFR][1000 genomes]
rs72839082	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72839085	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72839087	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72839088	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72839089	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7738866	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742338	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9348685	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9379774	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25494000-25551400	Weak transcription	Left Ventricle	heart
3	chr6:25509800-25548600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:25516200-25547000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
7	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
8	chr6:25516800-25606400	Weak transcription	Lung	lung
9	chr6:25519800-25556800	Weak transcription	Ovary	ovary
10	chr6:25522400-25588600	Weak transcription	HMEC	breast
11	chr6:25523000-25550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:25538600-25563600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:25539000-25561200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:25539600-25556800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:25539600-25565200	Weak transcription	Aorta	Aorta
20	chr6:25539800-25558200	Weak transcription	Thymus	Thymus
21	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
22	chr6:25540800-25550800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:25540800-25556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:25541200-25553400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:25541400-25547600	Weak transcription	Primary T cells from cord blood	blood
26	chr6:25541400-25558600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:25541800-25558400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:25542000-25548200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:25542400-25563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:25543600-25548000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:25543600-25551000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:25543600-25555600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:25543800-25562000	Weak transcription	Adipose Nuclei	Adipose
37	chr6:25544000-25593600	Weak transcription	Fetal Lung	lung
38	chr6:25544600-25565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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