Variant report
| Variant | rs12208674 |
|---|---|
| Chromosome Location | chr6:50020423-50020424 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:50019771..50021616-chr6:50095745..50098206,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10948541 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12190383 | 0.89[EUR][1000 genomes] |
| rs12196609 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap] |
| rs12197351 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12197933 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12208740 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap] |
| rs12213027 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs6929062 | 1.00[CEU][hapmap] |
| rs6931140 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72864882 | 0.89[EUR][1000 genomes] |
| rs7743362 | 0.88[EUR][1000 genomes] |
| rs7759575 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388030 | chr6:50018893-50022691 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
