Variant report
| Variant | rs12213027 |
|---|---|
| Chromosome Location | chr6:50070499-50070500 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226733 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10948541 | 0.87[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs12190383 | 0.99[EUR][1000 genomes] |
| rs12196609 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs12197351 | 0.83[EUR][1000 genomes] |
| rs12197933 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs12208674 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs12208740 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs1555679 | 0.81[ASN][1000 genomes] |
| rs1575590 | 0.81[ASN][1000 genomes] |
| rs57851256 | 0.81[ASN][1000 genomes] |
| rs6916616 | 1.00[ASN][1000 genomes] |
| rs6929062 | 1.00[CEU][hapmap] |
| rs6931140 | 0.80[EUR][1000 genomes] |
| rs72864882 | 0.82[EUR][1000 genomes] |
| rs73739923 | 0.81[ASN][1000 genomes] |
| rs73739931 | 0.81[ASN][1000 genomes] |
| rs73739932 | 0.81[ASN][1000 genomes] |
| rs73739933 | 0.81[ASN][1000 genomes] |
| rs73739934 | 0.81[ASN][1000 genomes] |
| rs7743362 | 1.00[EUR][1000 genomes] |
| rs7759575 | 0.99[EUR][1000 genomes] |
| rs7764678 | 1.00[ASN][1000 genomes] |
| rs932741 | 0.81[ASN][1000 genomes] |
| rs9395549 | 0.81[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:50070400-50070600 | Enhancers | HSMM | muscle |
