Variant report

Variant	rs12209487
Chromosome Location	chr6:132558888-132558889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12212223	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12215146	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1998075	0.84[CEU][hapmap]
rs62426694	0.85[AMR][1000 genomes]
rs6906965	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs7756650	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs7758221	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132552200-132562400	Weak transcription	Psoas Muscle	Psoas
2	chr6:132557600-132559000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:132557800-132559000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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