Variant report

Variant	rs62426694
Chromosome Location	chr6:132573276-132573277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12209487	0.85[AMR][1000 genomes]
rs1998075	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906965	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7745571	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7756650	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9388968	1.00[ASN][1000 genomes]
rs9388969	0.92[ASN][1000 genomes]
rs9388971	0.87[EUR][1000 genomes]
rs9402394	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132572200-132574000	Enhancers	HMEC	breast
3	chr6:132572600-132573800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:132572800-132573600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:132573000-132573400	Flanking Active TSS	NHEK	skin
6	chr6:132573000-132573600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:132573200-132573600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:132573200-132573600	ZNF genes & repeats	Aorta	Aorta
9	chr6:132573200-132573600	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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