Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132559814-132563625	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11154668	0.82[CEU][hapmap]
rs12209487	0.84[CEU][hapmap]
rs1406936	0.82[CEU][hapmap]
rs1998073	0.86[CEU][hapmap];0.86[CHD][hapmap];0.93[MEX][hapmap]
rs1998074	0.84[AMR][1000 genomes]
rs62426694	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738705	0.82[CEU][hapmap];0.86[CHD][hapmap];0.93[MEX][hapmap]
rs7738716	0.82[CEU][hapmap];0.86[CHD][hapmap]
rs7745571	0.88[EUR][1000 genomes]
rs7756650	0.95[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7758221	0.95[CEU][hapmap]
rs7771572	0.82[CEU][hapmap]
rs7772637	0.81[CEU][hapmap]
rs9321334	0.82[CEU][hapmap]
rs9388968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9388969	0.88[ASN][1000 genomes]
rs9388971	0.84[EUR][1000 genomes]
rs9402393	0.81[CEU][hapmap]
rs9402394	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1998075	LOC285735	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132552200-132562400	Weak transcription	Psoas Muscle	Psoas

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