Variant report

Variant	rs9402393
Chromosome Location	chr6:132556494-132556495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132550513-132556576	GM12878	blood:
2	6:132182612-132191683..6:132550513-132556576	GM12878	blood:
3	6:132176847-132180372..6:132550513-132556576	K562	blood:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10456995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10457585	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11154668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12212796	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1406936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998074	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998075	0.81[CEU][hapmap]
rs6902875	0.80[EUR][1000 genomes]
rs6906965	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs6911439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925688	0.80[EUR][1000 genomes]
rs7738705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7738716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752092	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7771572	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7772637	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9321333	1.00[CEU][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes]
rs9321334	1.00[CEU][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes]
rs9402395	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132550800-132557000	Weak transcription	NH-A	brain
2	chr6:132552200-132562400	Weak transcription	Psoas Muscle	Psoas
3	chr6:132552800-132556600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:132552800-132556800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:132553000-132557600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:132553800-132557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:132555400-132556800	Weak transcription	HMEC	breast
8	chr6:132555600-132556600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132555600-132558200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:132555600-132558400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:132555800-132557600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:132556000-132557000	Weak transcription	HSMM	muscle
13	chr6:132556000-132557200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:132556200-132557200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:132556200-132558000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:132556400-132557000	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:132556400-132558600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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