Variant report

Variant	rs9321334
Chromosome Location	chr6:132567078-132567079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132182612-132191683..6:132564401-132574898	Hela-S3	cervix:
2	6:132269655-132282174..6:132564401-132574898	GM12878	blood:
3	6:132176847-132180372..6:132564401-132574898	K562	blood:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10456995	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457585	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11154668	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12212796	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406936	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1998073	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes]
rs1998074	0.95[CEU][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes]
rs1998075	0.82[CEU][hapmap]
rs6902875	0.80[EUR][1000 genomes]
rs6906965	0.82[CEU][hapmap]
rs6911439	1.00[CEU][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes]
rs6925688	0.80[EUR][1000 genomes]
rs7738705	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7738716	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7739499	0.81[LWK][hapmap]
rs7752092	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7771572	1.00[CEU][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7772637	1.00[CEU][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes]
rs9321333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385597	0.81[LWK][hapmap]
rs9402393	1.00[CEU][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes]
rs9402395	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9321334	BCLAF1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132564200-132568200	Weak transcription	NHLF	lung
2	chr6:132565200-132567400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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